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    LOC4351604 60S ribosomal protein L3-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351604, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4351604
    Gene description
    60S ribosomal protein L3-like
    Locus tag
    OSNPB_120167900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    RPL3; RPL3A
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    Genomic context

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    See LOC4351604 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (3456892..3459437)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (3429135..3431766)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4351603 Neighboring gene uncharacterized LOC112937497 Neighboring gene 5-formyltetrahydrofolate cyclo-ligase-like protein COG0212 Neighboring gene ethylene-responsive transcription factor ERF110

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The primary structure of two proteins from the large ribosomal subunit of rice. Nishi R, et al. Biochim Biophys Acta, 1993 Oct 19. PMID 8218398
    2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic large ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    large ribosomal subunit protein uL3
    Names
    60S ribosomal protein L3
    LOC_Os12g07010
    ribosomal protein L3
    ribosomal protein L3A
    NP_001391969.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001405040.1 → NP_001391969.1  large ribosomal subunit protein uL3

      Status: VALIDATED

      Source sequence(s)
      AU094017, CB657088, CF303542, CI289271
      UniProtKB/Swiss-Prot
      P35684, Q2QX68
      UniProtKB/TrEMBL
      A0A067Y1U3, A0A8J8YDM7, A3CFA9, J7LIN0, Q0IPU6, Q6XEB7

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      3456892..3459437
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P35684.2 GenPept UniProtKB/Swiss-Prot:P35684

    Gene LinkOut

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