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    LOC4342723 seed allergenic protein RAG2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342723, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4342723
    Gene description
    seed allergenic protein RAG2-like
    Locus tag
    OSNPB_070214300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    RA14; RAG2; OsJ_23551; OJ1116_C08.114
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    Genomic context

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    See LOC4342723 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (6336541..6337286, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (6258992..6259690, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene seed allergenic protein RAG2-like Neighboring gene seed allergenic protein RAG1-like Neighboring gene alpha-amylase/trypsin inhibitor RA16-like Neighboring gene uncharacterized LOC136357378

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Overexpression of the 16-kDa α-amylase/trypsin inhibitor RAG2 improves grain yield and quality of rice. Zhou W, et al. Plant Biotechnol J, 2017 May. PMID 27775871, Free PMC Article
    2. Gene structure and expression of rice seed allergenic proteins belonging to the alpha-amylase/trypsin inhibitor family. Adachi T, et al. Plant Mol Biol, 1993 Jan. PMID 7678765
    3. Classification of rice allergenic protein cDNAs belonging to the alpha-amylase/trypsin inhibitor gene family. Alvarez AM, et al. Biochim Biophys Acta, 1995 Sep 6. PMID 7669811
    4. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. RAG2 regulates seed size and grain yield.
      Title: Overexpression of the 16-kDa α-amylase/trypsin inhibitor RAG2 improves grain yield and quality of rice.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables serine-type endopeptidase inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    seed allergenic protein RAG2
    Names
    LOC_Os07g11380
    Seed allergenic protein RA14
    allergen RAG2
    allergenic protein
    seed allergen RAG2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403034.1 → NP_001389963.1  seed allergenic protein RAG2 precursor

      Status: VALIDATED

      Source sequence(s)
      AK107328, CI256314
      UniProtKB/Swiss-Prot
      Q01882, Q01885, Q0D7S4, Q40652, Q7F174, Q9ST74
      UniProtKB/TrEMBL
      A2YJG1

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      6336541..6337286 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q01882.2 GenPept UniProtKB/Swiss-Prot:Q01882

    Gene LinkOut

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