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    LOC4327064 ethylene-responsive transcription factor ERF039 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327064, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4327064
    Gene description
    ethylene-responsive transcription factor ERF039
    Locus tag
    OSNPB_010200600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    Ap21
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    Genomic context

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    See LOC4327064 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (5464105..5465215, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (5454786..5455853, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4327349 Neighboring gene nuclear pore complex protein NUP35 Neighboring gene probable serine/threonine-protein kinase At1g54610 Neighboring gene beta-glucuronosyltransferase GlcAT14B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Transcription factor OsAP21 gene increases salt/drought tolerance in transgenic Arabidopsis thaliana. Jin X, et al. Mol Biol Rep, 2013 Feb. PMID 23104474
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. OsAP21 may play an important role in the response of transgenic Arabidopsis plants to salt/drought stresses.
      Title: Transcription factor OsAP21 gene increases salt/drought tolerance in transgenic Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ethylene-responsive transcription factor ERF039
    Names
    B1015E06.11
    Os01g0200600
    ethylene-responsive transcription factor TINY
    putative DRE binding factor 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      5464105..5465215 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788914.3 → XP_015644400.1  ethylene-responsive transcription factor ERF039

      UniProtKB/TrEMBL
      A0A0P0UZT2, A0A9K3Y6V5, A2WLR9, Q0JPU6, Q8LRE9
      Conserved Domains (1) summary
      smart00380
      Location:46 → 102
      AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
    Nucleotide Protein
    Heading Accession and Version

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