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    LOC4345541 ethylene-responsive transcription factor RAP2-4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345541, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4345541
    Gene description
    ethylene-responsive transcription factor RAP2-4
    Locus tag
    OSNPB_080408500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0042B03.7
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    Genomic context

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    See LOC4345541 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (19683822..19685508)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (19547304..19549014)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized WD repeat-containing protein C2A9.03 Neighboring gene uncharacterized LOC4345540 Neighboring gene probable trehalose-phosphate phosphatase 6 Neighboring gene endochitinase A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Overexpression of OsERF48 causes regulation of OsCML16, a calmodulin-like protein gene that enhances root growth and drought tolerance. Jung H, et al. Plant Biotechnol J, 2017 Oct. PMID 28244201, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. regulates CML16, a calmodulin-like protein gene that enhances root growth and drought tolerance
      Title: Overexpression of OsERF48 causes regulation of OsCML16, a calmodulin-like protein gene that enhances root growth and drought tolerance.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ethylene-responsive transcription factor RAP2-4
    Names
    AP domain DRE binding factor
    AP2-domain DRE binding factor DBF1
    Os08g0408500
    P0453D01.40

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      19683822..19685508
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795424.3 → XP_015650910.1  ethylene-responsive transcription factor RAP2-4

      UniProtKB/TrEMBL
      A2YV51, A3BT06, Q6Z9V4
      Conserved Domains (1) summary
      smart00380
      Location:104 → 160
      AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
    Nucleotide Protein
    Heading Accession and Version

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