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    LOC4348601 serine/threonine-protein phosphatase PP2A-4 catalytic subunit-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348601, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4348601
    Gene description
    serine/threonine-protein phosphatase PP2A-4 catalytic subunit-like
    Locus tag
    OSNPB_100410600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    PP2A4; OsJ_31490; OsJ_030257
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    Genomic context

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    See LOC4348601 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (14915110..14920234)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (14255741..14260855)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene F-box/kelch-repeat protein At1g55270 Neighboring gene uncharacterized LOC112936557 Neighboring gene uncharacterized LOC4348598 Neighboring gene histone-lysine N-methyltransferase ATXR4 Neighboring gene cysteine-rich receptor-like protein kinase 43

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein serine/threonine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mitotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine/threonine-protein phosphatase PP2A-4 catalytic subunit
    Names
    LOC_Os10g27050
    NP_001409955.1
    XP_066160535.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423026.1 → NP_001409955.1  serine/threonine-protein phosphatase PP2A-4 catalytic subunit

      Status: VALIDATED

      Source sequence(s)
      CB652287, CB656830, CI042362, CI302077
      UniProtKB/Swiss-Prot
      A3C4N5, B7EPC1

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      14915110..14920234
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066304438.1 → XP_066160535.1  serine/threonine-protein phosphatase PP2A-4 catalytic subunit isoform X1

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A3C4N5.2 GenPept UniProtKB/Swiss-Prot:A3C4N5

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials