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    LOC4342308 AP2-like ethylene-responsive transcription factor CRL5 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342308, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4342308
    Gene description
    AP2-like ethylene-responsive transcription factor CRL5
    Locus tag
    OSNPB_070124700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC4342308 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (1308675..1315007)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (1297933..1304263)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 3 subunit C Neighboring gene heterogeneous nuclear ribonucleoprotein 1 Neighboring gene putative xyloglucan glycosyltransferase 10 Neighboring gene uncharacterized LOC4342309

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Structural characterization and expression pattern analysis of the rice PLT gene family. Li P, et al. Acta Biochim Biophys Sin (Shanghai), 2011 Sep. PMID 21807632
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Data show that OsPLT8 (AK109848) preferentially expressed in root, stem, or seed.
      Title: Structural characterization and expression pattern analysis of the rice PLT gene family.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AP2-like ethylene-responsive transcription factor CRL5
    Names
    AP2-like ethylene-responsive transcription factor ANT
    Os07g0124700
    P0474G09.118
    putative AP2/EREBP transcription factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      1308675..1315007
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026026810.2 → XP_025882595.1  AP2-like ethylene-responsive transcription factor CRL5 isoform X1

      UniProtKB/Swiss-Prot
      Q0D8V3, Q84Z02
      Conserved Domains (1) summary
      smart00380
      Location:392 → 455
      AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs

    2. XM_026026812.2 → XP_025882597.1  AP2-like ethylene-responsive transcription factor CRL5 isoform X2

      UniProtKB/Swiss-Prot
      Q0D8V3, Q84Z02
      Conserved Domains (1) summary
      smart00380
      Location:391 → 454
      AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
    Nucleotide Protein
    Heading Accession and Version

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