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    LOC4346339 AT-hook motif nuclear-localized protein 20 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346339, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4346339
    Gene description
    AT-hook motif nuclear-localized protein 20
    Locus tag
    OSNPB_080563200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4346339 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (28348217..28350869, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (28200879..28202866, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene protein DETOXIFICATION 34 Neighboring gene uncharacterized LOC136351610 Neighboring gene bet1-like SNARE 1-1 Neighboring gene uncharacterized LOC107281816

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables minor groove of adenine-thymine-rich DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AT-hook motif nuclear-localized protein 20
    Names
    Os08g0563200
    P0543D10.26
    putative SAP1 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      28348217..28350869 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015793346.3 → XP_015648832.1  AT-hook motif nuclear-localized protein 20

      UniProtKB/TrEMBL
      Q0J3M7, Q6ZBX1
      Conserved Domains (1) summary
      cd11378
      Location:63 → 146
      DUF296; Domain of unknown function found in archaea, bacteria, and plants
    Nucleotide Protein
    Heading Accession and Version

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