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    LOC4342621 plasma membrane ATPase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342621, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4342621
    Gene description
    plasma membrane ATPase 1
    Locus tag
    OSNPB_070191200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    a2; OSA2
    Expression
    Ubiquitous expression in flower buds (RPKM 138.6), flowers (RPKM 99.0) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (4975817..4981814)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (4914662..4920653)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4342619 Neighboring gene bifunctional phosphatase IMPL2, chloroplastic Neighboring gene uncharacterized LOC112939615 Neighboring gene pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Identification and characterization of a family of genes for the plasma membrane H(+)-ATPase of Oryza sativa L. Ookura T, et al. Plant Cell Physiol, 1994 Dec. PMID 7697296
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables P-type proton-exporting transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proton export across plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of intracellular pH IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    plasma membrane ATPase 1
    Names
    OSJNBb0003E08.32
    Os07g0191200
    plasma membrane H+-ATPase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      4975817..4981814
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791529.2 → XP_015647015.1  plasma membrane ATPase 1

      UniProtKB/TrEMBL
      B8B893, B9FVY5, Q6Z4H9, Q8L6I2
      Conserved Domains (1) summary
      TIGR01647
      Location:36 → 812
      ATPase-IIIA_H; plasma-membrane proton-efflux P-type ATPase
    Nucleotide Protein
    Heading Accession and Version

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