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    LOC4329309 WRKY transcription factor WRKY51-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329309, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4329309
    Gene description
    WRKY transcription factor WRKY51-like
    Locus tag
    OSNPB_020462800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    WRKY42
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    Genomic context

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    See LOC4329309 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (15979772..15981067)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (15521416..15522731)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9271432 Neighboring gene transfer RNA histidin (anticodon GUG) Neighboring gene prefoldin subunit 1 Neighboring gene protein FAR1-RELATED SEQUENCE 5-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Overexpression of a cell wall damage induced transcription factor, OsWRKY42, leads to enhanced callose deposition and tolerance to salt stress but does not enhance tolerance to bacterial infection. Pillai SE, et al. BMC Plant Biol, 2018 Sep 3. PMID 30176792, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. OsWRKY42 regulates plant responses to either cell wall damage or salinity stress by acting as a negative regulator of jasmonic acid mediated responses.
      Title: Overexpression of a cell wall damage induced transcription factor, OsWRKY42, leads to enhanced callose deposition and tolerance to salt stress but does not enhance tolerance to bacterial infection.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    WRKY transcription factor WRKY51-like
    Names
    OSJNBa0035A24.9
    Os02g0462800
    WRKY transcription factor 42<WRKY42
    probable WRKY transcription factor 11

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      15979772..15981067
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015769356.3 → XP_015624842.1  WRKY transcription factor WRKY51-like

      UniProtKB/TrEMBL
      A3A6L6, Q0E1C4, Q6K4Y7
      Conserved Domains (2) summary
      pfam03106
      Location:169 → 225
      WRKY; WRKY DNA -binding domain
      pfam10533
      Location:122 → 165
      Plant_zn_clust; Plant zinc cluster domain
    Nucleotide Protein
    Heading Accession and Version

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