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    LOC4337062 uncharacterized LOC4337062 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337062, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4337062
    Gene description
    uncharacterized LOC4337062
    Locus tag
    OSNPB_040625300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 6.0), flower buds (RPKM 6.0) and 6 other tissues See more
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    Genomic context

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    See LOC4337062 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (32296161..32309015, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (31788421..31803243, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4337060 Neighboring gene 1-acyl-sn-glycerol-3-phosphate acyltransferase Neighboring gene BTB/POZ and MATH domain-containing protein 1 Neighboring gene BTB/POZ and MATH domain-containing protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4337062
    Names
    Os04g0625300
    Os04g0625350

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      32296161..32309015 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066309674.1 → XP_066165771.1  uncharacterized protein LOC4337062 isoform X2

    2. XM_015780650.3 → XP_015636136.1  uncharacterized protein LOC4337062 isoform X2

      UniProtKB/TrEMBL
      B9FCM1, Q7XPP8
      Conserved Domains (2) summary
      pfam11707
      Location:115 → 422
      Npa1; Ribosome 60S biogenesis N-terminal
      pfam16201
      Location:2069 → 2259
      NopRA1; Nucleolar pre-ribosomal-associated protein 1

    3. XM_015780649.3 → XP_015636135.1  uncharacterized protein LOC4337062 isoform X1

      UniProtKB/TrEMBL
      B9FCM1, Q7XPP8
      Conserved Domains (2) summary
      pfam11707
      Location:115 → 423
      Npa1; Ribosome 60S biogenesis N-terminal
      pfam16201
      Location:2069 → 2259
      NopRA1; Nucleolar pre-ribosomal-associated protein 1

    4. XM_015780648.3 → XP_015636134.1  uncharacterized protein LOC4337062 isoform X1

      UniProtKB/TrEMBL
      B9FCM1, Q7XPP8
      Conserved Domains (2) summary
      pfam11707
      Location:115 → 423
      Npa1; Ribosome 60S biogenesis N-terminal
      pfam16201
      Location:2069 → 2259
      NopRA1; Nucleolar pre-ribosomal-associated protein 1
    Nucleotide Protein
    Heading Accession and Version

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