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    LOC4344632 multiple organellar RNA editing factor 9, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344632, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4344632
    Gene description
    multiple organellar RNA editing factor 9, chloroplastic
    Locus tag
    OSNPB_080139100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1119_D01.18
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    Genomic context

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    See LOC4344632 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (2190366..2192458, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (2178093..2180205, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4344630 Neighboring gene organelle RRM domain-containing protein 2, mitochondrial Neighboring gene uncharacterized LOC136351386 Neighboring gene probable NAD(P)H dehydrogenase (quinone) FQR1-like 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in chloroplast RNA modification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cytidine to uridine editing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    multiple organellar RNA editing factor 9, chloroplastic
    Names
    Os08g0139100
    putative DAG protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      2190366..2192458 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795265.2 → XP_015650751.1  multiple organellar RNA editing factor 9, chloroplastic

      UniProtKB/TrEMBL
      A0A0N7KP92, B8BAM2, Q0J836, Q6ZKI1

    2. XM_015795263.2 → XP_015650749.1  multiple organellar RNA editing factor 9, chloroplastic

      UniProtKB/TrEMBL
      A0A0N7KP92, B8BAM2, Q0J836, Q6ZKI1

    3. XM_015795262.2 → XP_015650748.1  multiple organellar RNA editing factor 9, chloroplastic

      UniProtKB/TrEMBL
      A0A0N7KP92, B8BAM2, Q0J836, Q6ZKI1
    Nucleotide Protein
    Heading Accession and Version

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