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    LOC4346232 probable 6-phosphogluconolactonase 3, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346232, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4346232
    Gene description
    probable 6-phosphogluconolactonase 3, chloroplastic
    Locus tag
    OSNPB_080547100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsJ_28176; OsJ_027038; P0544G09.8
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    Genomic context

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    See LOC4346232 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (27550546..27553540)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (27403407..27406438)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene protein LEAD-SENSITIVE 1 Neighboring gene RNA-binding protein 1 Neighboring gene rab GTPase-activating protein 22 Neighboring gene cytochrome P450 78A9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 6-phosphogluconolactonase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in pentose-phosphate shunt IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable 6-phosphogluconolactonase 3, chloroplastic
    Names
    6PGL 3
    LOC_Os08g43370
    putative 6-phosphogluconolactonase
    NP_001409608.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422679.1 → NP_001409608.1  probable 6-phosphogluconolactonase 3, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AK073704, AK241584, CI387766

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      27550546..27553540
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6Z9C3.1 GenPept UniProtKB/Swiss-Prot:Q6Z9C3

    Gene LinkOut

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