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    LOC4345528 sulfate transporter 1.2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345528, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4345528
    Gene description
    sulfate transporter 1.2
    Locus tag
    OSNPB_080406400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0453D01.4
    Expression
    Biased expression in roots after flowering (RPKM 141.0), leaves after flowering (RPKM 137.0) and 3 other tissues See more
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    Genomic context

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    See LOC4345528 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (19563808..19569050)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (19427418..19432708)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene heavy metal-associated isoprenylated plant protein 5 Neighboring gene uncharacterized LOC136351590 Neighboring gene BTB/POZ and MATH domain-containing protein 3 Neighboring gene BTB/POZ and MATH domain-containing protein 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables secondary active sulfate transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in sulfate transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sulfate transporter 1.2
    Names
    Os08g0406400
    putative high affinity sulfate transporter

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      19563808..19569050
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066303564.1 → XP_066159661.1  sulfate transporter 1.2 isoform X2

    2. XM_015795252.3 → XP_015650738.1  sulfate transporter 1.2 isoform X1

      UniProtKB/TrEMBL
      A2YV38, A3BSZ6, Q6Z9Y1
      Conserved Domains (1) summary
      TIGR00815
      Location:80 → 644
      sulP; high affinity sulphate transporter 1

    3. XM_015795258.3 → XP_015650744.1  sulfate transporter 1.2 isoform X1

      UniProtKB/TrEMBL
      A2YV38, A3BSZ6, Q6Z9Y1
      Conserved Domains (1) summary
      TIGR00815
      Location:80 → 644
      sulP; high affinity sulphate transporter 1

    4. XM_015795250.3 → XP_015650736.1  sulfate transporter 1.2 isoform X1

      UniProtKB/TrEMBL
      A2YV38, A3BSZ6, Q6Z9Y1
      Conserved Domains (1) summary
      TIGR00815
      Location:80 → 644
      sulP; high affinity sulphate transporter 1

    5. XM_015795255.3 → XP_015650741.1  sulfate transporter 1.2 isoform X1

      UniProtKB/TrEMBL
      A2YV38, A3BSZ6, Q6Z9Y1
      Conserved Domains (1) summary
      TIGR00815
      Location:80 → 644
      sulP; high affinity sulphate transporter 1

    6. XM_015795251.3 → XP_015650737.1  sulfate transporter 1.2 isoform X1

      UniProtKB/TrEMBL
      A2YV38, A3BSZ6, Q6Z9Y1
      Conserved Domains (1) summary
      TIGR00815
      Location:80 → 644
      sulP; high affinity sulphate transporter 1

    7. XM_015795257.3 → XP_015650743.1  sulfate transporter 1.2 isoform X1

      UniProtKB/TrEMBL
      A2YV38, A3BSZ6, Q6Z9Y1
      Conserved Domains (1) summary
      TIGR00815
      Location:80 → 644
      sulP; high affinity sulphate transporter 1

    8. XM_015795247.3 → XP_015650733.1  sulfate transporter 1.2 isoform X1

      UniProtKB/TrEMBL
      A2YV38, A3BSZ6, Q6Z9Y1
      Conserved Domains (1) summary
      TIGR00815
      Location:80 → 644
      sulP; high affinity sulphate transporter 1

    9. XM_015795256.3 → XP_015650742.1  sulfate transporter 1.2 isoform X1

      UniProtKB/TrEMBL
      A2YV38, A3BSZ6, Q6Z9Y1
      Conserved Domains (1) summary
      TIGR00815
      Location:80 → 644
      sulP; high affinity sulphate transporter 1

    10. XM_015795253.3 → XP_015650739.1  sulfate transporter 1.2 isoform X1

      UniProtKB/TrEMBL
      A2YV38, A3BSZ6, Q6Z9Y1
      Conserved Domains (1) summary
      TIGR00815
      Location:80 → 644
      sulP; high affinity sulphate transporter 1

    11. XM_015795259.3 → XP_015650745.1  sulfate transporter 1.2 isoform X1

      UniProtKB/TrEMBL
      A2YV38, A3BSZ6, Q6Z9Y1
      Conserved Domains (1) summary
      TIGR00815
      Location:80 → 644
      sulP; high affinity sulphate transporter 1

    12. XM_015795254.3 → XP_015650740.1  sulfate transporter 1.2 isoform X1

      UniProtKB/TrEMBL
      A2YV38, A3BSZ6, Q6Z9Y1
      Conserved Domains (1) summary
      TIGR00815
      Location:80 → 644
      sulP; high affinity sulphate transporter 1

    13. XM_015795261.3 → XP_015650747.1  sulfate transporter 1.2 isoform X3

      Conserved Domains (2) summary
      TIGR00815
      Location:1 → 506
      sulP; high affinity sulphate transporter 1
      pfam01740
      Location:388 → 506
      STAS; STAS domain
    Nucleotide Protein
    Heading Accession and Version

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