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    LOC4347559 PTI1-like tyrosine-protein kinase 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347559, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4347559
    Gene description
    PTI1-like tyrosine-protein kinase 3
    Locus tag
    OSNPB_090513600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 72.0), flowers (RPKM 54.9) and 6 other tissues See more
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    Genomic context

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    See LOC4347559 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (24402853..24407013)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (19991619..19995784)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene vignain-like Neighboring gene uncharacterized LOC4347557 Neighboring gene protein FLOWERING LOCUS T Neighboring gene U11/U12 small nuclear ribonucleoprotein 35 kDa protein Neighboring gene probable E3 ubiquitin-protein ligase ARI8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein tyrosine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PTI1-like tyrosine-protein kinase 3
    Names
    Os09g0513600
    P0450E05.10
    putative Pto kinase interactor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      24402853..24407013
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066304176.1 → XP_066160273.1  PTI1-like tyrosine-protein kinase 3 isoform X1

    2. XM_066304177.1 → XP_066160274.1  PTI1-like tyrosine-protein kinase 3 isoform X2

    3. XM_015756417.3 → XP_015611903.1  PTI1-like tyrosine-protein kinase 3 isoform X1

      UniProtKB/TrEMBL
      Q69IN5
      Conserved Domains (2) summary
      smart00221
      Location:73 → 344
      STYKc; Protein kinase; unclassified specificity
      cl21453
      Location:72 → 347
      PKc_like; Protein Kinases, catalytic domain

    4. XM_015756419.3 → XP_015611905.1  PTI1-like tyrosine-protein kinase 3 isoform X2

      UniProtKB/TrEMBL
      Q69IN5
      Conserved Domains (1) summary
      cl21453
      Location:71 → 346
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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