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    LOC4325572 RING-H2 finger protein ATL46 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325572, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4325572
    Gene description
    RING-H2 finger protein ATL46
    Locus tag
    OSNPB_010213400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4325572 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (6208808..6210055, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (6199153..6200411, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene RING-H2 finger protein ATL39 Neighboring gene pollen-specific leucine-rich repeat extensin-like protein 2 Neighboring gene uncharacterized LOC107280560 Neighboring gene transcription factor PCF5-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RING-H2 finger protein ATL46
    Names
    OSJNBa0038J17.17
    Os01g0213400
    putative RING-H2 finger protein
    ring-H2 zinc finger protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      6208808..6210055 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015793842.3 → XP_015649328.1  RING-H2 finger protein ATL46

      UniProtKB/TrEMBL
      A0A0P0UZS8, A2WM12, Q0JPN2, Q94IZ7
      Conserved Domains (1) summary
      cd16461
      Location:128 → 171
      RING-H2_EL5_like; RING finger, H2 subclass, found in rice E3 ubiquitin-protein ligase EL5 and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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