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    LOC4345663 chlorophyll a-b binding protein P4, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345663, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4345663
    Gene description
    chlorophyll a-b binding protein P4, chloroplastic
    Locus tag
    OSNPB_080435900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    Cab27
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    Genomic context

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    See LOC4345663 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (21309090..21311179, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (21171276..21172675, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene transcription factor CSA-like Neighboring gene uncharacterized LOC4345662 Neighboring gene polypyrimidine tract-binding protein homolog 1 Neighboring gene probable apyrase 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in photosynthesis, light harvesting in photosystem I IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to light stimulus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chlorophyll a-b binding protein P4, chloroplastic
    Names
    Os08g0435900
    P0413H11.35
    chlorophyll a/b binding protein presusor
    chlorophyll a/b-binding protein presursor
    putative chlorophyll a/b-binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      21309090..21311179 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794244.2 → XP_015649730.1  chlorophyll a-b binding protein P4, chloroplastic

      UniProtKB/TrEMBL
      A2YVJ1, A3BTG2, Q6YWJ7
      Conserved Domains (1) summary
      PLN00101
      Location:1 → 243
      PLN00101; Photosystem I light-harvesting complex type 4 protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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