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    LOC4339368 mitochondrial-processing peptidase subunit alpha [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339368, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4339368
    Gene description
    mitochondrial-processing peptidase subunit alpha
    Locus tag
    OSNPB_050524300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 11.2), flower buds (RPKM 7.6) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (26219118..26224201)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (26101183..26106272)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene protein OXIDATIVE STRESS 3 LIKE 4 Neighboring gene phosphatidylglycerophosphate phosphatase PTPMT2 Neighboring gene ATP-dependent 6-phosphofructokinase 6 Neighboring gene putative leucine-rich repeat receptor-like protein kinase At2g19210

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metalloendopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mitochondrial-processing peptidase subunit alpha
    Names
    Os05g0524300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      26219118..26224201
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015784223.3 → XP_015639709.1  mitochondrial-processing peptidase subunit alpha

      UniProtKB/TrEMBL
      A0A0P0WQ88, B9FL82, Q0DGM0
      Conserved Domains (1) summary
      COG0612
      Location:65 → 486
      PqqL; Predicted Zn-dependent peptidase [General function prediction only]
    Nucleotide Protein
    Heading Accession and Version

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