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    LOC4342714 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342714, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4342714
    Gene description
    chloroplast stem-loop binding protein of 41 kDa a, chloroplastic
    Locus tag
    OSNPB_070212200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1664_D08.107
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    Genomic context

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    See LOC4342714 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (6211532..6214226)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (6134004..6136693)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene protein ALTERED PHOSPHATE STARVATION RESPONSE 1 Neighboring gene uncharacterized LOC136357295 Neighboring gene nudix hydrolase 16, mitochondrial Neighboring gene uncharacterized LOC4342716

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables UDP-glucose 4-epimerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in galactose catabolic process via UDP-galactose IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chloroplast stem-loop binding protein of 41 kDa a, chloroplastic
    Names
    OSJNBb0042J07.14
    Os07g0212200
    putative mRNA binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      6211532..6214226
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789815.3 → XP_015645301.1  chloroplast stem-loop binding protein of 41 kDa a, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0X3J8, B8B8E9, Q69M43, Q8GTK8
      Conserved Domains (1) summary
      PLN00016
      Location:15 → 391
      PLN00016; RNA-binding protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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