LOC4326854 CTD small phosphatase-like protein 2 [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4326854
Gene description: CTD small phosphatase-like protein 2
Locus tag: OSNPB_010665300
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression: Ubiquitous expression in mature seeds (RPKM 57.1), roots after flowering (RPKM 55.8) and 6 other tissues See more
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Genomic context

Location:: chromosome: 1

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	1	NC_089035.1 (27761245..27766402, complement)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	1	NC_029256.1 (27178688..27183839, complement)

Chromosome 1 - NC_089035.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables phosphoprotein phosphatase activity	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: CTD small phosphatase-like protein 2

Names: Chain A, Three-Dimensional Structure Of A Rna-Polymerase Ii Binding Protein With Associated Ligand-like; Os01g0665300; P0003E08.20-1

NP_001393212.1

EC 3.1.3.-

XP_015611082.1

EC 3.1.3.-

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001406283.1 → NP_001393212.1 CTD small phosphatase-like protein 2

Status: VALIDATED

Source sequence(s)

CB647490, CB665290, CB673654, CI305036, CI477986

UniProtKB/TrEMBL

A0A0P0V684, A0A5S6R7U0, A2WTI7, Q0JKL9, Q5SN52

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

NC_089035.1 Reference ASM3414082v1 Primary Assembly

Range

27761245..27766402 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015755596.3 → XP_015611082.1 CTD small phosphatase-like protein 2 isoform X1

Conserved Domains (1) summary

TIGR02251
Location:194 → 354

HIF-SF_euk; Dullard-like phosphatase domain