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    LOC4330689 nucleobase-ascorbate transporter 6 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330689, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4330689
    Gene description
    nucleobase-ascorbate transporter 6
    Locus tag
    OSNPB_020741800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    rup1
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    Genomic context

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    See LOC4330689 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (31541431..31546842, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (31046041..31051689, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136355444 Neighboring gene uncharacterized LOC4330688 Neighboring gene uncharacterized LOC4330690 Neighboring gene uncharacterized LOC4330691

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nucleobase-ascorbate transporter 6
    Names
    Os02g0741800
    P0516G10.32
    P0585G03.10
    putative permease 1
    root uracil permease 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      31541431..31546842 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767912.3 → XP_015623398.1  nucleobase-ascorbate transporter 6

      UniProtKB/TrEMBL
      A0A0P0VPE3, B8AIE1, Q2A0M6, Q6Z7R7, Q6Z815
      Conserved Domains (1) summary
      cl23746
      Location:43 → 448
      Xan_ur_permease; Permease family
    Nucleotide Protein
    Heading Accession and Version

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