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    LOC4343576 E3 ubiquitin-protein ligase JMJ24 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343576, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4343576
    Gene description
    E3 ubiquitin-protein ligase JMJ24
    Locus tag
    OSNPB_070557500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 14.6), roots after flowering (RPKM 13.4) and 6 other tissues See more
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    Genomic context

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    See LOC4343576 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (22476975..22482152)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (22247626..22252807)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene equilibrative nucleotide transporter 3 Neighboring gene equilibrative nucleotide transporter 3-like Neighboring gene uncharacterized GPI-anchored protein At4g28100 Neighboring gene uncharacterized LOC4343579

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone H3K9 demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of histone deacetylase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase JMJ24
    Names
    Os07g0557500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      22476975..22482152
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792027.3 → XP_015647513.1  E3 ubiquitin-protein ligase JMJ24

      UniProtKB/TrEMBL
      A0A0P0X873, Q0D5J1
      Conserved Domains (1) summary
      pfam08879
      Location:287 → 327
      WRC
    Nucleotide Protein
    Heading Accession and Version

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