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    LOC4339876 homeobox protein BEL1 homolog [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339876, updated on 12-Jul-2024

    Summary

    Gene symbol
    LOC4339876
    Gene description
    homeobox protein BEL1 homolog
    Locus tag
    OSNPB_060108900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    BEL1; OsBEL
    Expression
    Biased expression in leaves before flowering (RPKM 9.3), roots after flowering (RPKM 5.1) and 3 other tissues See more
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    Genomic context

    See LOC4339876 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (678685..685894)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (522684..529877)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene MADS-box transcription factor 50-like Neighboring gene expansin-A17-like Neighboring gene phosphoglycerate mutase-like protein AT74H Neighboring gene brassinosteroid-responsive RING protein 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    homeobox protein BEL1 homolog
    Names
    Os06g0108900
    P0514G12.24-1
    bell-like homeodomain protein
    putative homeotic protein BEL1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      678685..685894
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785518.3XP_015641004.1  homeobox protein BEL1 homolog

      UniProtKB/TrEMBL
      A0A0P0WS23, Q0DF87, Q33DJ9, Q5VS84
      Conserved Domains (2) summary
      smart00574
      Location:101236
      POX; domain associated with HOX domains
      pfam05920
      Location:312351
      Homeobox_KN; Homeobox KN domain