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    LOC4343109 CRIB domain-containing protein RIC7 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343109, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4343109
    Gene description
    CRIB domain-containing protein RIC7
    Locus tag
    OSNPB_070446000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flower buds (RPKM 125.6) and flowers (RPKM 39.2) See more
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (15388025..15390470)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (15230852..15233283)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene glycolipid transfer protein 1 Neighboring gene uncharacterized LOC136357417 Neighboring gene probable E3 ubiquitin-protein ligase XBOS34 Neighboring gene uncharacterized LOC112939557 Neighboring gene uncharacterized LOC136357500

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    CRIB domain-containing protein RIC7
    Names
    Os07g0446000
    P0030H06.108

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      15388025..15390470
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066312776.1 → XP_066168873.1  CRIB domain-containing protein RIC7

      UniProtKB/TrEMBL
      A0A0P0X687, B9FX05, Q8LH90

    2. XM_015790716.3 → XP_015646202.1  CRIB domain-containing protein RIC7

      UniProtKB/TrEMBL
      A0A0P0X687, B9FX05, Q8LH90
      Conserved Domains (1) summary
      cd00132
      Location:29 → 65
      CRIB; PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the ...
    Nucleotide Protein
    Heading Accession and Version

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