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    LOC4332849 probable E3 ubiquitin-protein ligase RHC1A [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332849, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4332849
    Gene description
    probable E3 ubiquitin-protein ligase RHC1A
    Locus tag
    OSNPB_030351800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 20.0), leaves after flowering (RPKM 16.4) and 6 other tissues See more
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    Genomic context

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    See LOC4332849 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (13253738..13257136, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (13199021..13201330, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene transfer RNA proline (anticodon UGG) Neighboring gene uncharacterized LOC4332848 Neighboring gene SAC3 family protein C Neighboring gene nucleolar protein 56

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable E3 ubiquitin-protein ligase RHC1A
    Names
    Os03g0351800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      13253738..13257136 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777516.3 → XP_015633002.1  probable E3 ubiquitin-protein ligase RHC1A

      UniProtKB/TrEMBL
      A3AHX9, Q10LG3
      Conserved Domains (2) summary
      cd16667
      Location:187 → 228
      RING-H2_RNF126_like; RING finger, H2 subclass, found in RING finger proteins RNF126, RNF115, and similar proteins
      pfam14369
      Location:6 → 37
      zinc_ribbon_9; zinc-ribbon

    2. XM_015777517.3 → XP_015633003.1  probable E3 ubiquitin-protein ligase RHC1A

      UniProtKB/TrEMBL
      A3AHX9, Q10LG3
      Conserved Domains (2) summary
      cd16667
      Location:187 → 228
      RING-H2_RNF126_like; RING finger, H2 subclass, found in RING finger proteins RNF126, RNF115, and similar proteins
      pfam14369
      Location:6 → 37
      zinc_ribbon_9; zinc-ribbon

    RNA

    1. XR_010740037.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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