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    LOC4336960 ent-kaur-16-ene synthase, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336960, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4336960
    Gene description
    ent-kaur-16-ene synthase, chloroplastic-like
    Locus tag
    OSNPB_040611800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    ks1; KS1A; OsKS1; OsKS1A; OsKS1B; OsKS1C
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    Genomic context

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    See LOC4336960 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (31534081..31538756)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (31026606..31031248)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene vacuolar-sorting receptor 7 Neighboring gene multiple RNA-binding domain-containing protein 1 Neighboring gene ent-kaurene synthase-like 3 Neighboring gene ent-kaurene synthase-like 2 Neighboring gene uncharacterized LOC4336963 Neighboring gene pEARLI1-like lipid transfer protein 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Isolation and characterization of a Ds-tagged rice (Oryza sativa L.) GA-responsive dwarf mutant defective in an early step of the gibberellin biosynthesis pathway. Margis-Pinheiro M, et al. Plant Cell Rep, 2005 Mar. PMID 15668792
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables magnesium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables terpene synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in diterpenoid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ent-kaur-16-ene synthase, chloroplastic
    Names
    Ent-kaurene synthase B
    Kaurene synthase 1
    LOC_Os04g52230
    OSJNBa0070C17.8
    ent-kaurene synthase 1
    ent-kaurene synthase 1A
    ent-kaurene synthase 1B
    ent-kaurene synthase 1C
    ent-kaurene synthase I
    NP_001389353.1
    NP_001389354.1
    XP_066165282.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402424.1 → NP_001389353.1  ent-kaur-16-ene synthase, chloroplastic isoform 1

      Status: VALIDATED

      Source sequence(s)
      AB126933, AP014960, CI119534, CI415465, CI643394, CI704309

    2. NM_001402425.1 → NP_001389354.1  ent-kaur-16-ene synthase, chloroplastic isoform 2

      Status: VALIDATED

      Source sequence(s)
      AB126933, AP014960, CI119534, CI415465, CI643394, CI704309

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      31534081..31538756
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066309185.1 → XP_066165282.1  ent-kaur-16-ene synthase, chloroplastic isoform X1

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0JA82.1 GenPept UniProtKB/Swiss-Prot:Q0JA82

    Gene LinkOut

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