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    LOC4326467 uncharacterized LOC4326467 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326467, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4326467
    Gene description
    uncharacterized LOC4326467
    Locus tag
    OSNPB_010102400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4326467 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (142328..146008)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (137593..141558)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351643 Neighboring gene thylakoid lumenal 17.9 kDa protein, chloroplastic Neighboring gene uncharacterized LOC4326468 Neighboring gene probable inactive shikimate kinase like 1, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4326467
    Names
    Os01g0102400
    P0402A09.22
    P0455C04.16
    P0672D08.43

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      142328..146008
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766964.3 → XP_015622450.1  uncharacterized protein LOC4326467 isoform X1

      UniProtKB/TrEMBL
      A0A0P0UWV4, A0A2H4C097, A2WJM7, Q0JRG6, Q93VF0
      Conserved Domains (1) summary
      COG5208
      Location:96 → 310
      HAP5; CCAAT-binding factor, subunit C [Transcription]

    2. XM_015766966.3 → XP_015622452.1  uncharacterized protein LOC4326467 isoform X2

      UniProtKB/TrEMBL
      A0A0P0UWV4, A0A2H4C097, A2WJM7, Q0JRG6, Q93VF0
      Conserved Domains (1) summary
      COG5208
      Location:92 → 306
      HAP5; CCAAT-binding factor, subunit C [Transcription]

    3. XM_015766967.3 → XP_015622453.1  uncharacterized protein LOC4326467 isoform X3

      UniProtKB/TrEMBL
      A0A0P0UWV4, A0A2H4C097, A2WJM7, Q0JRG6, Q93VF0
      Conserved Domains (2) summary
      pfam00125
      Location:38 → 147
      Histone; Core histone H2A/H2B/H3/H4
      cl23735
      Location:85 → 147
      H4; Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in ...
    Nucleotide Protein
    Heading Accession and Version

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