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    LOC4324516 very-long-chain enoyl-CoA reductase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324516, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4324516
    Gene description
    very-long-chain enoyl-CoA reductase
    Locus tag
    OSNPB_010150000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4324516 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (2715663..2719462, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (2707638..2711452, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene metallothionein-like protein 2A Neighboring gene uncharacterized LOC4324515 Neighboring gene geranylgeranyl transferase type-1 subunit beta Neighboring gene uncharacterized LOC111946217

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables oxidoreductase activity, acting on the CH-CH group of donors IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in very long-chain fatty acid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    very-long-chain enoyl-CoA reductase
    Names
    Os01g0150000
    P0009G03.2-1
    P0434B04.35-1
    putative synaptic glycoprotein SC2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      2715663..2719462 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766473.3 → XP_015621959.1  very-long-chain enoyl-CoA reductase

      UniProtKB/TrEMBL
      A0A0P0UY87, A0A0P0UY99, A0A7D3U5L1, B8ADA5, Q0JQN4, Q5ZED1
      Conserved Domains (1) summary
      PLN02560
      Location:1 → 310
      PLN02560; enoyl-CoA reductase
    Nucleotide Protein
    Heading Accession and Version

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