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    LOC4324417 protein BREAST CANCER SUSCEPTIBILITY 2 homolog B [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324417, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4324417
    Gene description
    protein BREAST CANCER SUSCEPTIBILITY 2 homolog B
    Locus tag
    OSNPB_010164800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0701D05.5
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    Genomic context

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    See LOC4324417 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    34
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (3352148..3363714, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (3343483..3355094, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene probable protein phosphatase 2C 1 Neighboring gene protein GET4 Neighboring gene dehydration-responsive element-binding protein 2A-like Neighboring gene uncharacterized LOC4327135 Neighboring gene uncharacterized LOC112937870

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in double-strand break repair via homologous recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein BREAST CANCER SUSCEPTIBILITY 2 homolog B
    Names
    B1189A09.50
    Os01g0164800
    Os01g0164900
    breast cancer 2 -like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      3352148..3363714 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767271.3 → XP_015622757.1  protein BREAST CANCER SUSCEPTIBILITY 2 homolog B isoform X2

      UniProtKB/TrEMBL
      B9ET11
      Conserved Domains (4) summary
      cd04494
      Location:1184 → 1415
      BRCA2DBD_OB2; BRCA2DBD_OB2: A subfamily of OB folds corresponding to the second OB fold (OB2) of the 800-amino acid C-terminal ssDNA binding domain (DBD) of BRCA2 (breast cancer susceptibility gene 2) protein, called BRCA2DBD. BRCA2 participates in homologous ...
      pfam00634
      Location:247 → 276
      BRCA2; BRCA2 repeat
      pfam09103
      Location:1038 → 1174
      BRCA-2_OB1; BRCA2, oligonucleotide/oligosaccharide-binding, domain 1
      pfam09169
      Location:965 → 1034
      BRCA-2_helical; BRCA2, helical

    2. XM_015767288.3 → XP_015622774.1  protein BREAST CANCER SUSCEPTIBILITY 2 homolog B isoform X4

      UniProtKB/TrEMBL
      B9ET11
      Conserved Domains (4) summary
      cd04494
      Location:1179 → 1410
      BRCA2DBD_OB2; BRCA2DBD_OB2: A subfamily of OB folds corresponding to the second OB fold (OB2) of the 800-amino acid C-terminal ssDNA binding domain (DBD) of BRCA2 (breast cancer susceptibility gene 2) protein, called BRCA2DBD. BRCA2 participates in homologous ...
      pfam00634
      Location:247 → 276
      BRCA2; BRCA2 repeat
      pfam09103
      Location:1033 → 1169
      BRCA-2_OB1; BRCA2, oligonucleotide/oligosaccharide-binding, domain 1
      pfam09169
      Location:960 → 1029
      BRCA-2_helical; BRCA2, helical

    3. XM_015767279.3 → XP_015622765.1  protein BREAST CANCER SUSCEPTIBILITY 2 homolog B isoform X3

      UniProtKB/TrEMBL
      B9ET11
      Conserved Domains (4) summary
      cd04494
      Location:1182 → 1413
      BRCA2DBD_OB2; BRCA2DBD_OB2: A subfamily of OB folds corresponding to the second OB fold (OB2) of the 800-amino acid C-terminal ssDNA binding domain (DBD) of BRCA2 (breast cancer susceptibility gene 2) protein, called BRCA2DBD. BRCA2 participates in homologous ...
      pfam00634
      Location:247 → 276
      BRCA2; BRCA2 repeat
      pfam09103
      Location:1036 → 1172
      BRCA-2_OB1; BRCA2, oligonucleotide/oligosaccharide-binding, domain 1
      pfam09169
      Location:963 → 1032
      BRCA-2_helical; BRCA2, helical

    4. XM_015767255.3 → XP_015622741.1  protein BREAST CANCER SUSCEPTIBILITY 2 homolog B isoform X1

      UniProtKB/TrEMBL
      B9ET11
      Conserved Domains (4) summary
      cd04494
      Location:1185 → 1416
      BRCA2DBD_OB2; BRCA2DBD_OB2: A subfamily of OB folds corresponding to the second OB fold (OB2) of the 800-amino acid C-terminal ssDNA binding domain (DBD) of BRCA2 (breast cancer susceptibility gene 2) protein, called BRCA2DBD. BRCA2 participates in homologous ...
      pfam00634
      Location:247 → 276
      BRCA2; BRCA2 repeat
      pfam09103
      Location:1039 → 1175
      BRCA-2_OB1; BRCA2, oligonucleotide/oligosaccharide-binding, domain 1
      pfam09169
      Location:966 → 1035
      BRCA-2_helical; BRCA2, helical

    5. XM_015767247.3 → XP_015622733.1  protein BREAST CANCER SUSCEPTIBILITY 2 homolog B isoform X1

      UniProtKB/TrEMBL
      B9ET11
      Conserved Domains (4) summary
      cd04494
      Location:1185 → 1416
      BRCA2DBD_OB2; BRCA2DBD_OB2: A subfamily of OB folds corresponding to the second OB fold (OB2) of the 800-amino acid C-terminal ssDNA binding domain (DBD) of BRCA2 (breast cancer susceptibility gene 2) protein, called BRCA2DBD. BRCA2 participates in homologous ...
      pfam00634
      Location:247 → 276
      BRCA2; BRCA2 repeat
      pfam09103
      Location:1039 → 1175
      BRCA-2_OB1; BRCA2, oligonucleotide/oligosaccharide-binding, domain 1
      pfam09169
      Location:966 → 1035
      BRCA-2_helical; BRCA2, helical

    6. XM_015767302.3 → XP_015622788.1  protein BREAST CANCER SUSCEPTIBILITY 2 homolog B isoform X5

      UniProtKB/TrEMBL
      B9ET11
      Conserved Domains (4) summary
      pfam00634
      Location:247 → 276
      BRCA2; BRCA2 repeat
      pfam09103
      Location:1039 → 1175
      BRCA-2_OB1; BRCA2, oligonucleotide/oligosaccharide-binding, domain 1
      pfam09169
      Location:966 → 1035
      BRCA-2_helical; BRCA2, helical
      cl09930
      Location:1185 → 1361
      RPA_2b-aaRSs_OBF_like; Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with oligonucleotide/oligosaccharide (OB) fold.
    Nucleotide Protein
    Heading Accession and Version

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