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    LOC4327136 uncharacterized LOC4327136 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327136, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4327136
    Gene description
    uncharacterized LOC4327136
    Locus tag
    OSNPB_010165200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    KEAP1
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    Genomic context

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    See LOC4327136 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (3370775..3376328, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (3361660..3367675, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene dehydration-responsive element-binding protein 2A-like Neighboring gene uncharacterized LOC4327135 Neighboring gene uncharacterized LOC112937870 Neighboring gene uncharacterized LOC107277399 Neighboring gene F-box protein At5g49610

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in response to endoplasmic reticulum stress IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4327136
    Names
    Os01g0165200
    P0701D05.9-1
    kelch-like protein 1
    putative Kelch-like protein 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      3370775..3376328 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026022991.2 → XP_025878776.1  uncharacterized protein LOC4327136 isoform X2

      Conserved Domains (4) summary
      smart00612
      Location:352 → 397
      Kelch; Kelch domain
      sd00038
      Location:437 → 479
      Kelch; KELCH repeat [structural motif]
      cl11171
      Location:8 → 94
      Dev_Cell_Death; Development and cell death domain
      cl28614
      Location:391 → 616
      BTB; Broad-Complex, Tramtrack and Bric a brac

    2. XM_015767540.3 → XP_015623026.1  uncharacterized protein LOC4327136 isoform X1

      UniProtKB/TrEMBL
      A0A0P0UYG5, A0A9K3Y7G6, Q0JQF5, Q5VQH0
      Conserved Domains (5) summary
      smart00612
      Location:561 → 607
      Kelch; Kelch domain
      smart00767
      Location:19 → 161
      DCD; DCD is a plant specific domain in proteins involved in development and programmed cell death
      sd00038
      Location:504 → 546
      Kelch; KELCH repeat [structural motif]
      pfam01344
      Location:453 → 500
      Kelch_1; Kelch motif
      pfam13854
      Location:642 → 675
      Kelch_5; Kelch motif
    Nucleotide Protein
    Heading Accession and Version

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