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    LOC4324587 ABC transporter D family member 2, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324587, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4324587
    Gene description
    ABC transporter D family member 2, chloroplastic
    Locus tag
    OSNPB_010218700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 34.6), roots after flowering (RPKM 19.8) and 6 other tissues See more
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    Genomic context

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    See LOC4324587 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (6510449..6516897, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (6500706..6507231, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136354911 Neighboring gene protein FLOWERING LOCUS T 1 Neighboring gene histone-lysine N-methyltransferase ATX5 Neighboring gene histone-lysine N-methyltransferase ATX3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ABC-type transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ABC transporter D family member 2, chloroplastic
    Names
    Os01g0218700
    P0489G09.13
    P0665D10.28
    putative ABC transporter Nda

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      6510449..6516897 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015756375.3 → XP_015611861.1  ABC transporter D family member 2, chloroplastic isoform X1

      UniProtKB/TrEMBL
      B8AAK9, Q0JPK1, Q5NAU5, Q5QNE1
      Conserved Domains (1) summary
      COG4178
      Location:110 → 740
      YddA; ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

    2. XM_015756382.3 → XP_015611868.1  ABC transporter D family member 2, chloroplastic isoform X2

      Conserved Domains (3) summary
      TIGR02673
      Location:321 → 568
      FtsE; cell division ATP-binding protein FtsE
      cd03223
      Location:322 → 585
      ABCD_peroxisomal_ALDP; ATP-binding cassette domain of peroxisomal transporter, subfamily D
      cl00549
      Location:8 → 229
      ABC_membrane; ABC transporter transmembrane region
    Nucleotide Protein
    Heading Accession and Version

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