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    LOC4325877 TOM1-like protein 9 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325877, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4325877
    Gene description
    TOM1-like protein 9
    Locus tag
    OSNPB_010229200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0485D09.7
    Expression
    Ubiquitous expression in flower buds (RPKM 89.2), flowers (RPKM 56.9) and 6 other tissues See more
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    Genomic context

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    See LOC4325877 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (7140036..7148159)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (7129169..7137309)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene transcription factor MYB3R-1 Neighboring gene uncharacterized LOC4327193 Neighboring gene protein EMBRYONIC FLOWER 1 Neighboring gene rac-like GTP-binding protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    TOM1-like protein 9
    Names
    Os01g0229200
    P0452F10.31
    target of Myb protein 1
    target of myb1 -like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      7140036..7148159
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757987.2 → XP_015613473.1  TOM1-like protein 9

      UniProtKB/TrEMBL
      A0A0N7KCL5, A2WMD4, Q0JPD0, Q5N7Y5
      Conserved Domains (4) summary
      TIGR01628
      Location:520 → 645
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      PHA03247
      Location:295 → 590
      PHA03247; large tegument protein UL36; Provisional
      cd14231
      Location:182 → 260
      GAT_GGA_like_plant; GAT domain found in uncharacterized Golgi-localized gamma ear-containing Arf-binding protein (GGA)-like proteins mainly found in plants
      cd03561
      Location:2 → 132
      VHS; VHS (Vps27/Hrs/STAM) domain family
    Nucleotide Protein
    Heading Accession and Version

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