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    LOC4327707 phospholipase A1 PLIP3, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327707, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4327707
    Gene description
    phospholipase A1 PLIP3, chloroplastic
    Locus tag
    OSNPB_010253900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4327707 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (8416256..8420214)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (8404253..8408375)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene replication protein A 14 kDa subunit-like Neighboring gene uncharacterized LOC9269417 Neighboring gene GTP-binding protein SAR1A Neighboring gene protein TPR1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phospholipase A1 activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phospholipase A1 PLIP3, chloroplastic
    Names
    Os01g0253900
    P0705D01.7-1
    P0705D01.7-2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      8416256..8420214
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766752.2 → XP_015622238.1  phospholipase A1 PLIP3, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0V0H5, A0A9K3Y807, A2ZRD1, Q5NBU0
      Conserved Domains (1) summary
      cd00519
      Location:348 → 512
      Lipase_3; Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of ...
    Nucleotide Protein
    Heading Accession and Version

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