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    LOC4325422 pathogenesis-related protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325422, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4325422
    Gene description
    pathogenesis-related protein 1
    Locus tag
    OSNPB_010382000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4325422 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (15998396..15999166)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (15934482..15935260)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112939039 Neighboring gene protein FAR1-RELATED SEQUENCE 6-like Neighboring gene alcohol acyltransferase 9 Neighboring gene pathogenesis-related protein PRB1-2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pathogenesis-related protein 1
    Names
    B1096D03.48
    OSJNBa0091E23.4
    Os01g0382000
    putative pathogenesis-related protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      15998396..15999166
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015786566.3 → XP_015642052.1  pathogenesis-related protein 1

      UniProtKB/TrEMBL
      A0A0N7KD00, A0N0C2, O04000, Q7F1Q9, Q7F2P0
      Conserved Domains (1) summary
      cd05381
      Location:26 → 164
      SCP_PR-1_like; SCP_PR-1_like: SCP-like extracellular protein domain, PR-1 like subfamily. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal ...
    Nucleotide Protein
    Heading Accession and Version

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