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    LOC4326411 uncharacterized LOC4326411 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326411, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4326411
    Gene description
    uncharacterized LOC4326411
    Locus tag
    OSNPB_010534800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1029_F04.28
    Expression
    Ubiquitous expression in roots before flowering (RPKM 38.6), leaves before flowering (RPKM 26.5) and 6 other tissues See more
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    Genomic context

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    See LOC4326411 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (19957980..19960949)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (19389798..19392847)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112939323 Neighboring gene ABC transporter B family member 11 Neighboring gene uncharacterized LOC136356090 Neighboring gene calcium permeable stress-gated cation channel 1 Neighboring gene uncharacterized LOC136354955

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables polyubiquitin modification-dependent protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of VCP-NPL4-UFD1 AAA ATPase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4326411
    Names
    Os01g0534800
    putative PRLI-interacting factor K

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      19957980..19960949
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766673.3 → XP_015622159.1  uncharacterized protein LOC4326411

      UniProtKB/TrEMBL
      A0A0P0V3P8, A2ZU17, Q5JLH9
      Conserved Domains (2) summary
      PLN03086
      Location:1 → 569
      PLN03086; PRLI-interacting factor K; Provisional
      pfam03152
      Location:91 → 256
      UFD1; Ubiquitin fusion degradation protein UFD1
    Nucleotide Protein
    Heading Accession and Version

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