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    LOC4326322 probable E3 ubiquitin-protein ligase ZFP1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326322, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4326322
    Gene description
    probable E3 ubiquitin-protein ligase ZFP1
    Locus tag
    OSNPB_010667700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 84.1), flowers (RPKM 42.5) and 6 other tissues See more
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    Genomic context

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    See LOC4326322 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (27890446..27899460, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (27303261..27312303, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene WUSCHEL-related homeobox 7-like Neighboring gene ras-related protein RABA1f Neighboring gene splicing factor U2af small subunit B-like Neighboring gene monothiol glutaredoxin-S5-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable E3 ubiquitin-protein ligase ZFP1
    Names
    C-terminal zinc-finger-like
    OSJNBb0063G05.28-1
    OSJNBb0063G05.28-2
    Os01g0667700
    RING-finger protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      27890446..27899460 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066306910.1 → XP_066163007.1  probable E3 ubiquitin-protein ligase ZFP1 isoform X4

      UniProtKB/TrEMBL
      A2WTK9

    2. XM_066306907.1 → XP_066163004.1  probable E3 ubiquitin-protein ligase ZFP1 isoform X3

      UniProtKB/TrEMBL
      A2WTK9

    3. XM_015759906.2 → XP_015615392.1  probable E3 ubiquitin-protein ligase ZFP1 isoform X2

      UniProtKB/Swiss-Prot
      Q5QLR5, Q5QLR6
      UniProtKB/TrEMBL
      A2WTK9
      Conserved Domains (2) summary
      COG5540
      Location:352 → 513
      COG5540; RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
      cd16481
      Location:471 → 512
      RING-H2_TTC3; RING finger, H2 subclass, found in Tetratricopeptide repeat protein 3 (TTC3) and similar proteins

    4. XM_015759897.2 → XP_015615383.1  probable E3 ubiquitin-protein ligase ZFP1 isoform X1

      UniProtKB/TrEMBL
      A2WTK9
      Conserved Domains (2) summary
      COG5540
      Location:353 → 514
      COG5540; RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
      cd16481
      Location:472 → 513
      RING-H2_TTC3; RING finger, H2 subclass, found in Tetratricopeptide repeat protein 3 (TTC3) and similar proteins

    5. XM_066306909.1 → XP_066163006.1  probable E3 ubiquitin-protein ligase ZFP1 isoform X1

      UniProtKB/TrEMBL
      A2WTK9

    6. XM_066306908.1 → XP_066163005.1  probable E3 ubiquitin-protein ligase ZFP1 isoform X3

      UniProtKB/TrEMBL
      A2WTK9
    Nucleotide Protein
    Heading Accession and Version

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