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    LOC4325502 DExH-box ATP-dependent RNA helicase DExH6 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325502, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4325502
    Gene description
    DExH-box ATP-dependent RNA helicase DExH6
    Locus tag
    OSNPB_010767700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 17.7), flower buds (RPKM 17.5) and 6 other tissues See more
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    Genomic context

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    See LOC4325502 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (32955447..32965712)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (32350346..32360562)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene transfer RNA glutamine (anticodon CUG) Neighboring gene protein TUNICAMYCIN INDUCED 1 Neighboring gene BTB/POZ domain and ankyrin repeat-containing protein NPR2-like Neighboring gene uncharacterized LOC4325504

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in intracellular anatomical structure IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DExH-box ATP-dependent RNA helicase DExH6
    Names
    B1143G03.7-1
    OSJNBb0053G03.21-1
    Os01g0767700
    putative DEIH-box RNA/DNA helicase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      32955447..32965712
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015756470.3 → XP_015611956.1  DExH-box ATP-dependent RNA helicase DExH6

      UniProtKB/TrEMBL
      B8AA72
      Conserved Domains (4) summary
      cd06007
      Location:131 → 188
      R3H_DEXH_helicase; R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine ...
      PTZ00322
      Location:562 → 622
      PTZ00322; 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
      COG1643
      Location:257 → 1053
      HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
      sd00045
      Location:528 → 558
      ANK; ANK repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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