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    LOC4324809 protein DEETIOLATED 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324809, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4324809
    Gene description
    protein DEETIOLATED 2
    Locus tag
    OSNPB_010851600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4324809 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (37292782..37293876)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (36666928..36668077)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene reticulon-like protein B12 Neighboring gene putative ataxin-3 homolog Neighboring gene alpha-glucan phosphorylase, H isozyme Neighboring gene uncharacterized LOC107279844 Neighboring gene calmodulin-binding receptor-like cytoplasmic kinase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 3-oxo-5-alpha-steroid 4-dehydrogenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in brassinosteroid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein DEETIOLATED 2
    Names
    Os01g0851600
    P0529H11.33
    putative steroid 5alpha-reductase
    steroid 5-alpha-reductase DET2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      37292782..37293876
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015774024.3 → XP_015629510.1  protein DEETIOLATED 2

      UniProtKB/TrEMBL
      A0A0P0VAI9, A0A9K3Y7I9, A2WX21, Q0JHP2, Q8LQ34
      Conserved Domains (1) summary
      cl21511
      Location:7 → 268
      PEMT; Phospholipid methyltransferase
    Nucleotide Protein
    Heading Accession and Version

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