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    LOC4324937 ammonium transporter 3 member 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324937, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4324937
    Gene description
    ammonium transporter 3 member 1-like
    Locus tag
    OSNPB_010870300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    AMT3-1; OsAMT3;1; OsJ_04233
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    Genomic context

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    See LOC4324937 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (38360546..38366448)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (37726786..37737829)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107276856 Neighboring gene DNA repair protein XRCC2 homolog Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Constitutive expression of a novel-type ammonium transporter OsAMT2 in rice plants. Suenaga A, et al. Plant Cell Physiol, 2003 Feb. PMID 12610225
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ammonium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ammonium transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ammonium transporter 3 member 1
    Names
    LOC_Os01g65000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001396865.1 → NP_001383794.1  ammonium transporter 3 member 1

      Status: VALIDATED

      Source sequence(s)
      AK120352
      UniProtKB/Swiss-Prot
      A0A0P0VAU4, Q84KJ6
      UniProtKB/TrEMBL
      A0A158URW8, A2WXE3
      Conserved Domains (1) summary
      cl03012
      Location:28 → 459
      Ammonium_transp; Ammonium Transporter Family

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      38360546..38366448
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066309680.1 → XP_066165777.1  ammonium transporter 3 member 1 isoform X1

      UniProtKB/Swiss-Prot
      A0A0P0VAU4, Q84KJ6
      UniProtKB/TrEMBL
      A0A158URW8, A2WXE3

    2. XM_066309704.1 → XP_066165801.1  ammonium transporter 3 member 1 isoform X1

      UniProtKB/Swiss-Prot
      A0A0P0VAU4, Q84KJ6
      UniProtKB/TrEMBL
      A0A158URW8, A2WXE3
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84KJ6.1 GenPept UniProtKB/Swiss-Prot:Q84KJ6

    Gene LinkOut

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