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    LOC4328093 protein trichome birefringence-like 12 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328093, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4328093
    Gene description
    protein trichome birefringence-like 12
    Locus tag
    OSNPB_020117900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1217_F02.2; OJ1442_E05.33
    Expression
    Ubiquitous expression in flower buds (RPKM 4.0), flowers (RPKM 3.9) and 6 other tissues See more
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    Genomic context

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    See LOC4328093 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (941314..944514, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (934590..937821, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene peptidyl-prolyl cis-trans isomerase FKBP18, chloroplastic Neighboring gene UTP--glucose-1-phosphate uridylyltransferase Neighboring gene autophagy protein 5-like Neighboring gene pentatricopeptide repeat-containing protein At2g01860 Neighboring gene probable serine/threonine-protein kinase PIX13

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables O-acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein trichome birefringence-like 12
    Names
    Os02g0117900
    leaf senescence related protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      941314..944514 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771964.3 → XP_015627450.1  protein trichome birefringence-like 12

      UniProtKB/TrEMBL
      A2X053, Q6ZGL3, Q6ZH49
      Conserved Domains (2) summary
      pfam13839
      Location:103 → 393
      PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
      pfam14416
      Location:48 → 97
      PMR5N; PMR5 N terminal Domain
    Nucleotide Protein
    Heading Accession and Version

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