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    LOC4328461 squamosa promoter-binding-like protein 4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328461, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4328461
    Gene description
    squamosa promoter-binding-like protein 4
    Locus tag
    OSNPB_020174100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    SPL4
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    Genomic context

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    See LOC4328461 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (4083017..4087090)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (4073875..4077871)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene succinate-semialdehyde dehydrogenase, mitochondrial-like Neighboring gene myb family transcription factor IPN2 Neighboring gene serine/threonine-protein kinase STY13 Neighboring gene trihelix transcription factor ASR3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Yilmaz A, et al. Plant Physiol, 2009 Jan. PMID 18987217, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    squamosa promoter-binding-like protein 4
    Names
    LOC_Os02g07780
    OSJNBa0073A21.21-1
    OSJNBa0073A21.21-2
    OSJNBa0073A21.21-3
    SBP transcription factor
    squamosa promoter binding protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001406454.1 → NP_001393383.1  squamosa promoter-binding-like protein 4 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AK061484
      UniProtKB/TrEMBL
      B7E6G1

    2. NM_001406455.1 → NP_001393384.1  squamosa promoter-binding-like protein 4 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK066057, AK068702
      UniProtKB/Swiss-Prot
      Q6H507, Q6H508, Q6H509
      UniProtKB/TrEMBL
      B7EBQ0

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      4083017..4087090
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767589.2 → XP_015623075.1  squamosa promoter-binding-like protein 4 isoform X2

      UniProtKB/TrEMBL
      A2X1G6
      Conserved Domains (1) summary
      pfam03110
      Location:68 → 142
      SBP; SBP domain

    2. XM_015767590.3 → XP_015623076.1  squamosa promoter-binding-like protein 4 isoform X1

      UniProtKB/TrEMBL
      A2X1G6
      Conserved Domains (1) summary
      pfam03110
      Location:68 → 142
      SBP; SBP domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6H509.1 GenPept UniProtKB/Swiss-Prot:Q6H509

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