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    LOC4328585 glucomannan 4-beta-mannosyltransferase 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328585, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4328585
    Gene description
    glucomannan 4-beta-mannosyltransferase 1-like
    Locus tag
    OSNPB_020192500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CSLA1; CSLA9; OsCslA1; OsCslA9
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    Genomic context

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    See LOC4328585 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (5162412..5169544, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (5151793..5158912, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4328583 Neighboring gene methyl-CpG-binding domain-containing protein 9 Neighboring gene peroxiredoxin-2E-2, chloroplastic-like Neighboring gene uncharacterized LOC136355410

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mannan synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glucomannan 4-beta-mannosyltransferase 1
    Names
    Cellulose synthase-like protein A1
    Glucomannan-synthase 1
    LOC_Os02g09930
    Mannan synthase 1
    P0437H03.110
    P0453H10.31
    cellulose synthase-like A1
    putative cellulose synthase-like protein OsCslA9
    NP_001396301.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001409372.1 → NP_001396301.1  glucomannan 4-beta-mannosyltransferase 1

      Status: VALIDATED

      Source sequence(s)
      AK102694, CI533710, CI684025
      UniProtKB/Swiss-Prot
      B7ETH8, Q7PC76
      UniProtKB/TrEMBL
      A2X1X3

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      5162412..5169544 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7PC76.1 GenPept UniProtKB/Swiss-Prot:Q7PC76

    Gene LinkOut

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