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    LOC4328940 ubiquitin-conjugating enzyme E2 5B-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328940, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4328940
    Gene description
    ubiquitin-conjugating enzyme E2 5B-like
    Locus tag
    OSNPB_020261100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    UBC5B; OsUBC5b; OsJ_06152
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    Genomic context

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    See LOC4328940 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (9143228..9146808)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (9115998..9119427)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene BTB/POZ domain-containing protein POB1 Neighboring gene uncharacterized LOC4328939 Neighboring gene uncharacterized LOC112937994 Neighboring gene serine/threonine-protein phosphatase 7 long form homolog Neighboring gene disease resistance protein L6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. EL5, a rice N-acetylchitooligosaccharide elicitor-responsive RING-H2 finger protein, is a ubiquitin ligase which functions in vitro in co-operation with an elicitor-responsive ubiquitin-conjugating enzyme, OsUBC5b. Takai R, et al. Plant J, 2002 May. PMID 12028574
    2. ERECT LEAF1 suppresses jasmonic acid response in rice by decreasing OsWRKY4 stability. Sakamoto T, et al. Plant Signal Behav, 2019. PMID 30572766, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in protein polyubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin-conjugating enzyme E2 5B
    Names
    E2 ubiquitin-conjugating enzyme 5B
    LOC_Os02g16040
    OSJNBb0026F09.5
    Ubiquitin carrier protein 5b
    Ubiquitin-protein ligase 5B
    ubiquitin-conjugating enzyme OsUBC5b
    NP_001396895.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001409966.1 → NP_001396895.1  ubiquitin-conjugating enzyme E2 5B

      Status: VALIDATED

      Source sequence(s)
      CF314034, CI286613, CI432171
      UniProtKB/Swiss-Prot
      A0A0P0VHC2, Q8S919
      UniProtKB/TrEMBL
      A6N0N4

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      9143228..9146808
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8S919.1 GenPept UniProtKB/Swiss-Prot:Q8S919

    Gene LinkOut

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