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    LOC4329433 F-box/kelch-repeat protein At1g67480 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329433, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4329433
    Gene description
    F-box/kelch-repeat protein At1g67480
    Locus tag
    OSNPB_020504900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1003_F04.33
    Expression
    Ubiquitous expression in roots before flowering (RPKM 57.8), flowers (RPKM 49.3) and 6 other tissues See more
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    Genomic context

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    See LOC4329433 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (18419608..18422775, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (17958498..17961723, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene RPM1-interacting protein 4 Neighboring gene acyl-[acyl-carrier-protein] desaturase 3, chloroplastic-like Neighboring gene exocyst complex component EXO70B1 Neighboring gene uncharacterized LOC4329435

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    F-box/kelch-repeat protein At1g67480
    Names
    F-box domain and kelch repeat containing protein FBK7
    Os02g0504900
    kelch repeat-containing F-box protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001416620.1 → NP_001403549.1  F-box/kelch-repeat protein At1g67480

      Status: VALIDATED

      Source sequence(s)
      AK065386, AK073150, CI605466
      UniProtKB/TrEMBL
      Q0E110, Q6K649

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      18419608..18422775 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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