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    LOC4329635 zinc finger transcription factor YY1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329635, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4329635
    Gene description
    zinc finger transcription factor YY1
    Locus tag
    OSNPB_020551900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1004_H01.19
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 32.7), flowers (RPKM 30.7) and 6 other tissues See more
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    Genomic context

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    See LOC4329635 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (21279711..21283144)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (20800942..20804432)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene formin-like protein 14 Neighboring gene protein PSK SIMULATOR 1 Neighboring gene transmembrane 9 superfamily member 1 Neighboring gene pentatricopeptide repeat-containing protein At3g62890

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of PcG protein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger transcription factor YY1
    Names
    Os02g0551900
    putative WREBP-2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      21279711..21283144
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772203.3 → XP_015627689.1  zinc finger transcription factor YY1 isoform X1

      UniProtKB/TrEMBL
      B9F0H9, Q0E0H1, Q6ZI35
      Conserved Domains (2) summary
      COG5048
      Location:100 → 249
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:69 → 88
      ZF_C2H2; C2H2 Zn finger [structural motif]

    2. XM_015772205.3 → XP_015627691.1  zinc finger transcription factor YY1 isoform X2

      UniProtKB/TrEMBL
      Q6ZI35
      Conserved Domains (4) summary
      COG5048
      Location:86 → 235
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:55 → 74
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:96 → 121
      zf-H2C2_2; Zinc-finger double domain
      cl02212
      Location:19 → 85
      DUF2169; Uncharacterized protein conserved in bacteria (DUF2169)
    Nucleotide Protein
    Heading Accession and Version

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