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    LOC9267147 protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9267147, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC9267147
    Gene description
    protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial
    Locus tag
    OSNPB_020564600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flowers (RPKM 2.1) and flower buds (RPKM 1.0) See more
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    Genomic context

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    See LOC9267147 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (21915527..21916205)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (21435164..21436019)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene CLP protease regulatory subunit CLPX1, mitochondrial Neighboring gene uncharacterized LOC4329697 Neighboring gene bHLH transcription factor RHL1 Neighboring gene transfer RNA alanine (anticodon CGC)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial
    Names
    Os02g0564600
    P0020C11.17
    late embryogenesis abundant protein Lea5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      21915527..21916205
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015769582.3 → XP_015625068.1  protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial

      UniProtKB/TrEMBL
      A0A0P0VKH7, B8ADZ6, B9F0L9, C7IYJ1, Q6Z7E8
      Conserved Domains (1) summary
      pfam03242
      Location:4 → 87
      LEA_3; Late embryogenesis abundant protein
    Nucleotide Protein
    Heading Accession and Version

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