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    LOC4330955 putative lipase C4A8.10 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330955, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4330955
    Gene description
    putative lipase C4A8.10
    Locus tag
    OSNPB_020787100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1316_E06.21
    Expression
    Ubiquitous expression in roots after flowering (RPKM 18.5), leaves before flowering (RPKM 18.0) and 6 other tissues See more
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    Genomic context

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    See LOC4330955 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (33926056..33929860)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (33429954..33433748)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene pathogenesis-related protein PRB1-3 Neighboring gene pathogenesis-related protein PRB1-3 Neighboring gene U-box domain-containing protein 52 Neighboring gene mitogen-activated protein kinase kinase 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cellular lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative lipase C4A8.10
    Names
    OSJNBa0054K20.7
    Os02g0787100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      33926056..33929860
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771872.3 → XP_015627358.1  putative lipase C4A8.10

      UniProtKB/TrEMBL
      A0A0P0VQJ9, Q6K4Q2
      Conserved Domains (1) summary
      pfam05057
      Location:135 → 360
      DUF676; Putative serine esterase (DUF676)
    Nucleotide Protein
    Heading Accession and Version

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