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    LOC4331074 E3 ubiquitin-protein ligase WAV3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331074, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4331074
    Gene description
    E3 ubiquitin-protein ligase WAV3
    Locus tag
    OSNPB_020806700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1111_C07.20
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    Genomic context

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    See LOC4331074 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (34936390..34941170, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (34439761..34444755, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9272519 Neighboring gene clathrin interactor EPSIN 2 Neighboring gene long chain base biosynthesis protein 1b-like Neighboring gene phosphoenolpyruvate carboxylase kinase 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase WAV3
    Names
    Os02g0806700
    putative zinc finger family protein
    zinc finger-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      34936390..34941170 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015769685.2 → XP_015625171.1  E3 ubiquitin-protein ligase WAV3

      UniProtKB/TrEMBL
      A0A0P0VQY0, B8AEF5, Q6K8E9
      Conserved Domains (3) summary
      cd01466
      Location:281 → 452
      vWA_C3HC4_type; VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b ...
      cd16448
      Location:95 → 139
      RING-H2; H2 subclass of RING (RING-H2) finger and its variants
      pfam14624
      Location:627 → 700
      Vwaint; VWA / Hh protein intein-like
    Nucleotide Protein
    Heading Accession and Version

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