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    LOC4332111 two-component response regulator ORR21-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332111, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4332111
    Gene description
    two-component response regulator ORR21-like
    Locus tag
    OSNPB_030224200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    ORR1; RR21; OsRRB1; OsJ_09978
    Expression
    Broad expression in roots before flowering (RPKM 84.9), leaves before flowering (RPKM 41.6) and 6 other tissues See more
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    Genomic context

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    See LOC4332111 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (6512670..6518512)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107280403 Neighboring gene probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 2, mitochondrial Neighboring gene alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 Neighboring gene uncharacterized LOC112938215

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Identification and characterization of cytokinin-signalling gene families in rice. Ito Y, et al. Gene, 2006 Nov 1. PMID 16919402
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytokinin-activated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phosphorelay signal transduction system IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    two-component response regulator ORR21
    Names
    B-type response regulator
    LOC_Os03g12350
    OSJNBa0081P02.4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402093.1 → NP_001389022.1  two-component response regulator ORR21

      Status: VALIDATED

      Source sequence(s)
      AK111899, CI075714, CI311161, CI570428
      UniProtKB/Swiss-Prot
      A0A0P0VV29, Q8H7S7

    2. NM_001402094.1 → NP_001389023.1  two-component response regulator ORR21

      Status: VALIDATED

      Source sequence(s)
      AK111899, CI075714, CI311161, CI324068, CI570428
      UniProtKB/Swiss-Prot
      A0A0P0VV29, Q8H7S7

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

      Range
      6512670..6518512
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015775092.2 → XP_015630578.1  two-component response regulator ORR21

      UniProtKB/Swiss-Prot
      Q8H7S7
      Conserved Domains (2) summary
      TIGR01557
      Location:202 → 255
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      cd17584
      Location:18 → 132
      REC_typeB_ARR-like; phosphoacceptor receiver (REC) domain of type B Arabidopsis response regulators (ARRs) and similar domains

    2. XM_015775091.2 → XP_015630577.1  two-component response regulator ORR21

      UniProtKB/Swiss-Prot
      Q8H7S7
      Conserved Domains (2) summary
      TIGR01557
      Location:202 → 255
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      cd17584
      Location:18 → 132
      REC_typeB_ARR-like; phosphoacceptor receiver (REC) domain of type B Arabidopsis response regulators (ARRs) and similar domains
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8H7S7.1 GenPept UniProtKB/Swiss-Prot:Q8H7S7

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