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    LOC4332484 uncharacterized LOC4332484 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332484, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4332484
    Gene description
    uncharacterized LOC4332484
    Locus tag
    OSNPB_030287600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 8.9), flower buds (RPKM 8.4) and 5 other tissues See more
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    Genomic context

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    See LOC4332484 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (9984290..9991212)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (9933520..9940522)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene LOB domain-containing protein 1 Neighboring gene uncharacterized LOC136355712 Neighboring gene probable glucuronosyltransferase Os03g0287800 Neighboring gene protein disulfide isomerase-like 5-1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4332484
    Names
    Os03g0287600
    Os03g0287700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      9984290..9991212
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772539.3 → XP_015628025.1  uncharacterized protein LOC4332484

      UniProtKB/TrEMBL
      A3AGU1, Q10N06
      Conserved Domains (2) summary
      pfam14309
      Location:602 → 743
      DUF4378; Domain of unknown function (DUF4378)
      pfam14383
      Location:33 → 58
      VARLMGL; DUF761-associated sequence motif

    2. XM_066308549.1 → XP_066164646.1  uncharacterized protein LOC4332484

      UniProtKB/TrEMBL
      A3AGU1, Q10N06

    3. XM_015772538.3 → XP_015628024.1  uncharacterized protein LOC4332484

      UniProtKB/TrEMBL
      A3AGU1, Q10N06
      Conserved Domains (2) summary
      pfam14309
      Location:602 → 743
      DUF4378; Domain of unknown function (DUF4378)
      pfam14383
      Location:33 → 58
      VARLMGL; DUF761-associated sequence motif
    Nucleotide Protein
    Heading Accession and Version

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