U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4333348 uncharacterized LOC4333348 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333348, updated on 10-Oct-2024

    Summary

    Gene symbol
    LOC4333348
    Gene description
    uncharacterized LOC4333348
    Locus tag
    OSNPB_030587100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LOC4333348 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (22543683..22548366)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (21685298..21689191)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4333346 Neighboring gene inositol monophosphatase 3 Neighboring gene kinesin-like protein KIN-12C Neighboring gene transcriptional regulator DEF1 Neighboring gene uncharacterized LOC107277743

    Genomic regions, transcripts, and products

    General protein information

    Preferred Names
    uncharacterized LOC4333348
    Names
    Os03g0587100

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001418360.1NP_001405289.1  uncharacterized LOC4333348

      Status: VALIDATED

      Source sequence(s)
      AK064020, AK102947
      UniProtKB/TrEMBL
      A0A0P0VZQ4, Q6F2U6

    RNA

    1. NR_184737.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK064020, AK110975

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      22543683..22548366
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776299.3XP_015631785.1  uncharacterized LOC4333348 isoform X1

      UniProtKB/TrEMBL
      A0A0P0VZQ4, A3AJZ9, Q6F2U6
      Conserved Domains (1) summary
      pfam03641
      Location:162309
      Lysine_decarbox; Possible lysine decarboxylase

    RNA

    1. XR_010739775.1 RNA Sequence

    2. XR_010739776.1 RNA Sequence